NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1191187

Scaffold Ga0211732_1191187


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1191187 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2578
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014503Metagenome / Metatranscriptome262Y
F048947Metagenome147Y
F053829Metagenome / Metatranscriptome140Y
F085113Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_11911871F048947AGGMNSLQRRRGLREFKKLEHSVLIDGKAHRAAGAWCLTQFGKRWEAIYGADGVWTMFWAGSNNHDKYIFHFVKEQDMLMFILKWS
Ga0211732_11911873F014503GAGMKKTVVHHWAFHDGVTPINPGNQFGESILPRGWSCWVYPRDDQVFEEWMLRMCPTAECTRRFNSGDPMTTVYISNDKEAVLFQLKWM
Ga0211732_11911875F053829GAGMGRRKTPYMEMSITLPSLGEVLATRARAVFPYRINFNRVGYENLSLMKSWCEDNCKSIWRSESTHALYWQFEDDYDATMFMLRWGSAEGNELK
Ga0211732_11911879F085113GGAMFAYSDEWKKFKPPDDVLEQCHQVLITDNDAEAAGEPFWKIKKWCLAHCHSYIWFDVTDVSDVGYQWDEIASYWFHDEKDAVMFTLKYKGGK
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Institute for Fundamental Biomedical Research
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