NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1136758

Scaffold Ga0211732_1136758


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1136758 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5060
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015601Metagenome / Metatranscriptome253Y
F054039Metagenome / Metatranscriptome140N
F066790Metagenome / Metatranscriptome126N
F080054Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0211732_11367581F066790GGAMLSNLMQRLQDMFKPYTLEDFISDADPKDYKDIQRLEAVWHQYRERKLFNNCY
Ga0211732_113675812F080054GGAGMSTQPNYTAELEALILDVLLPVYEQHCRQRGIASLRSEINPELLKQLRKKKTIPRLFMPKTNDNL
Ga0211732_11367586F015601GGAGMAGYTKEFLIDAFMSRYVNCDHLPIEKLERLENMANDLYDRVGRDQFRVYACLDAEAIREYKNKVTT
Ga0211732_11367589F054039AGCAGMIEVSPNYRRLAKVLNKTRKSLTQTCYELGIDIDDIEDHLLVEVIDQCSHCNIWSQQLVKDLDYNPVCPVCVRLTGL
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