NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1069667

Scaffold Ga0211732_1069667


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1069667 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2404
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F002598Metagenome / Metatranscriptome544Y
F017134Metagenome / Metatranscriptome242Y
F029434Metagenome / Metatranscriptome188Y
F076101Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_106966710F000447AGGAGGMGYIEIFRIDDEGAGWVDLSEATPTELLDLEIGLFQEGAI
Ga0211732_10696672F017134GAGGMELFTVACLNYEICGAQETFDNDAEYEIYGDDYICAECYASEEMEFFETIGWSDSDALASAGFGMDEDY
Ga0211732_10696675F076101GGAMYKITLAYDGNAPHWQKDYENEFEAWKDFFAFTDWGFANEYSTVNIYNSEMKCFTKIFYREERKVVEVK
Ga0211732_10696676F002598AGAAGGMATKLYTIESLLVGKNYRSNSRHFSGEIVSAKPRPEIWYGDKTEAFLIEVRAGGLRNKFATIAVKVGE
Ga0211732_10696678F001562GAGGMKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHADYLAEMENE
Ga0211732_10696679F029434AGGMKKYTFGVWLDIDAEDEEMALSLFDSVVKNAFVSDSYCFEWKEVADEIAI
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