NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1031964

Scaffold Ga0211732_1031964


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1031964 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1484
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005701Metagenome / Metatranscriptome392Y
F075696Metagenome / Metatranscriptome118N
F088343Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_10319642F005701N/AMLTHTKGHTMFTNCIAYAKLVYNKKLNAYKVQIAFNVHKKLVGTNYKYSFPVQSKCNYVSGDLLAENLQEEVQRTVAFAQQNLRTTQIVFVE
Ga0211732_10319643F075696AGGAMQNTKSKLDSLMLQLQAVLDDAGLDEHETIQNAFNALACALDDTIIA
Ga0211732_10319644F088343N/AMYDFTTLTQTQKNAMQALVNKYAHVEGSYESTMLGGIVHAYCDSGILTDAYSTDDAELVAKYFTEEAQDSGYLELFNNFIVEVSGGTEELLCCKVVEEMCAIIDDVELASAYIGKL
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