NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0194110_10020359

Scaffold Ga0194110_10020359


Overview

Basic Information
Taxon OID3300020084 Open in IMG/M
Scaffold IDGa0194110_10020359 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6780
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.9054Long. (o)29.4853Alt. (m)Depth (m)1200
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021068Metagenome / Metatranscriptome220Y
F034858Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0194110_100203595F021068AGGMNCGLRVMFMQPFDCTIYAVCIDGEEVRYEAKSEIIPILGGAWAITDEKRDALRQKGYVFDNEGGYMSALNERWGELTCVQWMLLNAEEKNIGNAQYRRNWIEPHDEWYADDTLYVPEPAVFACSLEQQFYGGHRDFDAPAITRELADSGQWVFSRKEIDAVWHQNLFIGCNMARGPKREYKEFMTVLFHALIPIWEKHKDRFLSIEGYDKRAIAFIAERIITGLVLHRDRILPNVKIATAPIGFIN
Ga0194110_100203598F034858AGGVSAAFISMASPQIKFCISTCKTFAPHTIPVVIGSMIRWGIKAEEILIVNGGWETDAVSSYKGVEMLLVKQNSFEYTPLIEIVERELWSDYWFLLHDTCTVGERFNSLVRALPVEQPKKVAMKGTPSMSVGLYSMPYLMQHKDRLTAIKNFDLSREGLQAWKQWGVPNEDYMLWKLGDVPTHVYHPELHGPDEWNYQGHADFYDTGHPRRVEYFPQLDLYKAKSNWQGVQPTLCIDI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.