NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194113_10043168

Scaffold Ga0194113_10043168


Overview

Basic Information
Taxon OID3300020074 Open in IMG/M
Scaffold IDGa0194113_10043168 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4483
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047017Metagenome150Y
F067678Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0194113_100431682F047017AGGAGMAKPTRVIDGGGDPFTEAAKAPSMSTWIVNLLKNVPELKAIYDTVRNPDGSFNRSVDAIIDMITSSSWYLENGPTVAGNIAARYKFGEKYYQQKINQFKISISGLATAIGLDMTDPDTADYLSSLAETAYLNNWDNEYIENTIINNKDIFGKIKGGAYATAVQDLASYSNLMGFPLSEQSRADYQRRLIGFSTKEGLRVRATSDDIKREINAKTAQLYPFFADDIAAGRTLWDLTSTQRKKWSDLLEVDEDTLDWNDPLWKDGKIFSMIDEKTGKMIMRPSWDAEKLIKQDERWQYTENATRLYEGYGIGMLNKFGLAAI
Ga0194113_100431684F067678GGAGMATNYYDDEEDDDTITDVVGQLRKVNRALEKRTKELEQELSGLKTQTRQRTVKDVLQAKGLNPKIAAFIPPDIDSSEEEIIKWVNEYGDVFGIQTPSEEKPEEKSPEVKAQARINNLVSTGSAPDIDEDAFAKIAGAKTREDLDAILGLN
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