NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0197907_10926258

Scaffold Ga0197907_10926258


Overview

Basic Information
Taxon OID3300020069 Open in IMG/M
Scaffold IDGa0197907_10926258 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2029
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005991Metagenome / Metatranscriptome384Y
F040247Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0197907_109262582F040247GGAMNVLAQKTTHRGARLLALHLQSLDPKAVPARDRLDLELGDELARKLIFALAPHSSRRAA
Ga0197907_109262583F005991GAGGMRRYGMYDASRGLTLALAAALAGLGLWGATQIGMQTTGRFWLSMAVVAGAGLLIALANHVGTWTKGLRLRMSPGTFALAFLPVLVCVGWILIANQPGHGWQEARLDSWSNSIGILGLVHSIGLWHGVLAFALGLVLGLSLDGVPAPVTETEPAYAGPADAATGPRVADEPVAAERRYATTRDSAPPEAAPPASPTEESAETQTRTRIPSR
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