NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0197907_10045108

Scaffold Ga0197907_10045108


Overview

Basic Information
Taxon OID3300020069 Open in IMG/M
Scaffold IDGa0197907_10045108 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4423
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002712Metagenome / Metatranscriptome535Y
F023427Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0197907_100451081F002712GGGGGMTTEQRQSTGSGVARATFGTVLFIAWGVLSVLWVYDAIYELAHSHLTPAITAVVAILLMLVLAVMEGLEVVMIHDWSRLYPDRTNHDLAAWLSARQMFVASICVAATILAARDVIHVPFTSYTIEGANSKIFNLVWTTFTILWFMQIFPKVMAAINPVRYLKMTGGAALPVVNVIKAIGISWPAEKTAAAVQSLTGWHPEPTLERAPRRGPDLADAWAALIPEDGRPAQRPPEQ
Ga0197907_100451083F023427GAGMREVRPVTTRAAHGSGRLVLDAAGRKLAAVRVEEREIEKALAQEMASAAVSQGGTGRATIRPRTAGPSGPRGGEGQRPSDTLDPRVQDRPPRVFA
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