Scaffold Ga0181555

Basic Information
Taxon OID	3300020051 Open in IMG/M
Scaffold ID	Ga0181555_1002995 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504AT metaG (spades assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020051 Open in IMG/M

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504AT metaG (spades assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13736
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (27.27%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

13736

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (27.27%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014254	Metagenome / Metatranscriptome	264	N
F031081	Metagenome / Metatranscriptome	183	N
F040083	Metagenome / Metatranscriptome	162	N
F105084	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181555_100299515	F031081	GGA	MAKVERSSYPVKKFMIKSPKGETIYFGQAGYGDYDLWSRVDPEYAEKKRYRYTTSHKAILLKDGTPAWKSPETAEFYASRALWNFQRGNPLFDQVVAIRNKSLTKEEKAFITKQKKLLAKKRSK
Ga0181555_10029952	F040083	N/A	MDPQAVYNGFASMFRNMLISMTASIALIGFSEKFELMAPVVRMIGFTGMMVAAFIGFKTYRDFLDYIDSIDGEVPVAKRWRSWAYTSLFYSVLIFTLAAIYLFRKVIIF
Ga0181555_100299520	F014254	N/A	MSFKKECEQMGWWFRSKPEGVPITHTLMDGSGVLVVPLQQRARFYEICMQCLSKREKLFMVEQTKSSDRFRMFLDVDYLTTEDQGAVTDETIKRWAMHLYEAFPSLGPVLVSTCTRKQDRNFKNGIHLSWPQVTVTYGSAMNIYKRVMMEMKKFDDSVQWDSVLDKSVFKTGLRTIWAWKIKRESKEMVVPYVPRFEVNKDGLTEILQSKPTASMLERFSILPHGNEPNHFAGDDTIISGASVDDEFVTWIKQVYPKHNISKVEKVIPKKTHWVITTTCKYCEFIGKEHQSNHIWFLVDKESQTIMSKCHDEDHKGLSGRKLMVHPKIIKYLQKLNKV
Ga0181555_10029957	F105084	GAG	MITICAETSTPFKIPEGLQGRMRKLTDKRKAYLQSRKDQRVEGRRNAVKFITQELERSTDLYAERKDLEKDFLDFFFESKVDKFARPKLIKDSSEDEEN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181555_1002995

Overview

Ecosystem & Geography

Associated Families

Sequences