NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1160089

Scaffold Ga0207193_1160089


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1160089 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1866
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001338Metagenome / Metatranscriptome719Y
F058813Metagenome134N
F065732Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_11600891F001338N/APKFEKVKVWEDGTCSARLFFVDDKGFCLSKNFSSKYGKALAMLVGKFSGKFTNEIRLDATPAEYMQYIEPACGQTILVGVDVEQNGEYNGKPQYKYKLTYPKGSQKPAVANDLPNPEDVP
Ga0207193_11600892F058813AGGAMAAMSAPTLVLICGYARAGKDTLASGILEWATRPARKQNFADYLKDAANDFLMSLHLEGDFHNEAFKVQHRDFLVAAGKLARGLDKDIFAKNLANYCPIQMTPGEQAPETVVCSDLRYANEVEVCQDILHDLGWRVRTIYVATAGIGPANAEELDSICEIREKHDFDLEMTFAPNSRNTIMQEGRYIAKTWRL
Ga0207193_11600893F065732N/AMDEHLSLDERILWARRAGLSQERIDFLLACPKYTRTGRNDKPAYIKAENPNHHLQKLGACWWLRIRRRKTDILHNLGKDLETARRHRDEMLAAYDAGKPIPHLDNK
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