Scaffold Ga0207193_1137209

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207193_1137209

Scaffold Ga0207193_1137209

Overview

Basic Information
Taxon OID	3300020048 Open in IMG/M
Scaffold ID	Ga0207193_1137209 Open in IMG/M
Source Dataset Name	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2092
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location Name	Lake Manganika, Minnesota, USA
Coordinates	Lat. (^o)	47.489552	Long. (^o)	-92.573009	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F004476	Metagenome / Metatranscriptome	436	Y
F040618	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_11372094	F003750	GAGG	MTLDMINRLLYLVVWGSGIVAFWQITKHMPKALYTLLECISVMACSVLLLTPIAMIIEYILGGNIHTTMMCVGCLAGVGLLCGIWMVMVQSSRELQGKKQYKYVVL
Ga0207193_11372095	F004476	AGAAG	MLFSKQGFKTVDTTEEFVKQVMEFGQKDIVLSVTHSNGVIDIVVSPTMDAIEADVYHFLNDETELKYTMPIKSLTASYISSLSLTSAIHLYLSEAFKVADIFARTTRQSTDYAK
Ga0207193_11372096	F040618	N/A	MENTTTVRMSMTVQVKDVSKKSSCIGFVGQGTWFDGKSFIVTQYQANPTCWYFFVYNDFVPQENFFKGFKGVYSYGNEIWNLNPDNGHFSGTVYLYSTMTDTLYIPYSISQPKRETSPTFLFEIS

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