NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1134534

Scaffold Ga0207193_1134534


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1134534 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2124
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015997Metagenome / Metatranscriptome250N
F101141Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0207193_11345341F101141GGAMMEKPKKERRFLKTLGKIGEILIQEVLLKVGSNLIKRIGGKKTLPSILILFLCISLFAQYPNTGNKQRLGFQTSADGLVWRGSISDTSSIQPVSNQNAWVILDTVNLKIY
Ga0207193_11345342F015997N/AMSQLIQASEVIAGGVARPTPADIRLDKTLISPHIQDAEFRWIVPAIGITLYDSMVEDKGTSTAFTSTAYQDIWDKQLKSFCANAVLYEAAPYMVMQLGTNGLYTIDNEYGQNVGVEGLKFYQDTLLQRLEVKKKRIKDLLCNYSTPLTAFIPSAIGCPEATCEEDEEINDIYNTLGIVL
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