NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1121435

Scaffold Ga0207193_1121435


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1121435 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2292
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010754Metagenome299Y
F039040Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_11214351F039040AGAAGGMTHTVISPLVIGQLDSDPLETSRDALVEGASSTGQLIANYAKALCIRFNLVDANDNVIAPWYSLTGKEKKGVKTERALFVQKMXXXXKMIARGFVKPDGKPSATVDTYWQRVKEASGYVPKGRVTGGTDVDAKTVTELKTIINRIFKAEEDGQDPSASQFKGQLMEVFEGLGGDVDTLG
Ga0207193_11214353F010754GAGGMLETTDFDWKECRECGDDVHIERWQRGYKLCLFCGEEAARVERMSWCVIQEYGKGNYQYVTPTSAHTTLKQTNQKLLRG
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