NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1076460

Scaffold Ga0207193_1076460


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1076460 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3225
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010765Metagenome / Metatranscriptome299Y
F014261Metagenome264Y
F021107Metagenome / Metatranscriptome220Y
F053888Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_10764602F053888N/AMNQDPVTQITVGDRPIRLSRPVLPHAARRLATVVPQLNALNTAGKSQADAAAALGVSVGSVRTWIGLAGIAWSNLNKRGPYNIKK
Ga0207193_10764604F014261N/AMKTIIAIIIFGWLAVVTFCGPELARAINGPEPVKAKTVRRAR
Ga0207193_10764606F010765N/AVSALPQPPSPEEIPVEARDIGMGILIGAVSWLVRYFCSPDRNSLGYIARRTATAGLTSLLVGIATKGYFSSEAIAFAAAGASGYASPELVDLLLARIKAMRGKTPSKG
Ga0207193_10764609F021107N/AMIYLLCIALGFAGGFYAGLKNASSSKVEKAKSILDALKGK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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