NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1071364

Scaffold Ga0207193_1071364


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1071364 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3392
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000868Metagenome / Metatranscriptome853Y
F021481Metagenome / Metatranscriptome218Y
F038241Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_10713641F021481N/AMAPITNTKTGRFYKKGDTFTTGKSGITGAITEIISVRPNLTKLGLQTENGLRWAMVKVGA
Ga0207193_10713644F000868AGGMSFLENENQMVIDAIYSEIGEQLVEDWVNSNLDEGQMFADFRFAEMSNDNYIKGRFNQFYDLTPEDQYYIEWDEEK
Ga0207193_10713645F038241GAGGMLGYTKEDLDQMSNSVHDAKLFYILNSDVTKVDEDPIVDGLLKTQDFLQGLWAEGYFDNE
Ga0207193_10713647F000263GAGGMELIPDYNIPPHLQRMIDAGVSGLDIMHGELKNLMLIAEQELAEASAREDETEEAMDSMDRTRCEGALDTLVELYNLTYQLSFAIGARNEA
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