NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1042527

Scaffold Ga0207193_1042527


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1042527 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4938
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002935Metagenome519Y
F010684Metagenome / Metatranscriptome300Y
F020167Metagenome225Y
F023106Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_104252712F010684AGGMAEFKVEVIFEPTGDYMTFRYEAEAEDEEALLNEVLSQLSIVSFKEQE
Ga0207193_104252714F023106GGAMRISRRITEEEKVANKIGNMVSDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYAYNNL
Ga0207193_10425274F002935AGGAMRERTTGYMGNVLDGKKLAKIANDIYALQYPDFSKCKVDDLLLIELEEKNSYGDPKYAVICSEGVGWQQDTYGCLEIPTNIGQGGYYNGRVFISVEVVKSCQTIFKKDISEYIRTFGDRLDGNCDLWQSKMSVVPSTILA
Ga0207193_10425275F020167N/AMTQTMRTIDELVNEMYMDNEQHLEYMENMNGGDCDCAIHTTLNTIVKYWWDEEN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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