NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1014575

Scaffold Ga0207193_1014575


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1014575 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10498
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004366Metagenome / Metatranscriptome441Y
F013294Metagenome / Metatranscriptome272N
F023327Metagenome / Metatranscriptome210N

Sequences

Protein IDFamilyRBSSequence
Ga0207193_101457511F004366N/AMNSLQAIIDHIELFYTNHLQVKKVGSDFKEQLYNFATQDEKYPIVFVVPVSVNPTENTSEFNFDIYCFDIIQKDRANIITILSDTQQILNDLYIYYMDSNDYAFDVIGLPSFQAINNDLLDYAAGYVMNITLTVNDWTDCAVPL
Ga0207193_10145753F013294GAGMMGHSLGNVSVHLFVGKFGIRTLWYGMKKVLDRYINNNYHEVRAYTLYFLSKMGSNIEADTVINNSYLHVLTINEDSESEDQVKSYLLNTIKYQILWNTSLSHKDDRVTSMEYDGSDEVDNEQDLQAKILEDKIYSTHKSLIEIYRSEIDDHVHRVVFEAYIDKGYITARAMAKYFDIPVTSAHYLIREIKQNLRKLQYRYETISNN
Ga0207193_10145756F023327N/AMQIDFMCAVVEDYIYKMKGVQVRIDRRAVATDGRQMAMLMNAYQIANGDKEHSNI
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