NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1007096

Scaffold Ga0207193_1007096


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1007096 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16878
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (86.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057200Metagenome136Y
F070990Metagenome / Metatranscriptome122N
F090370Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0207193_100709610F070990GAGMKLIWDAPQDLKTDRKFEEIILPKGVYTFKITKAEFAPDQYKKNEFNKDGMSLKLWLDTEFQGNNKRIFATIGTDKPWEINTVVIACNLPAVKKGGSLNEQSLVDVEIKASIDQYTSKVGKVSNIVKAYLPAHPAAVTKHADPVPVDDMDIPF
Ga0207193_100709619F057200GGAMAPPKKPSLTPLQTTVLVGQLIGILIGLGLYVSSLGEKNAVLTRIAEDTKELRVTAAELTKAVIRGQSIDEKHTEAIAALAIKIDARMNLK
Ga0207193_10070966F090370N/AMGKKKGSKVTQADIILRIATRVAALGSERDAQRLQEVAVWIVSWEVKVREFEAVEARLRQCEGERDHIRHLEFCLRPRLTRNQDPKRRKI
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