| Basic Information | |
|---|---|
| Taxon OID | 3300020048 Open in IMG/M |
| Scaffold ID | Ga0207193_1002881 Open in IMG/M |
| Source Dataset Name | Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Minnesota - Twin Cities |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29531 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (25.58%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Manganika, Minnesota, USA | |||||||
| Coordinates | Lat. (o) | 47.489552 | Long. (o) | -92.573009 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005113 | Metagenome / Metatranscriptome | 411 | Y |
| F012017 | Metagenome / Metatranscriptome | 284 | N |
| F022191 | Metagenome | 215 | N |
| F046246 | Metagenome | 151 | N |
| F046325 | Metagenome / Metatranscriptome | 151 | N |
| F050991 | Metagenome / Metatranscriptome | 144 | N |
| F083888 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207193_100288112 | F083888 | N/A | MNNKMLPRSNYSPCECQSTSGDRINGIPDKVLRPARKEINVTSIGSNMKVDSKGYKVVKASPDGEPVGVGKPKKKKYVEEDDED |
| Ga0207193_100288122 | F005113 | N/A | MTKEDHKNAIVSQIQQQNLNVLVDSLAAALAEIEVLKAEVAKLKETPVG |
| Ga0207193_100288128 | F046325 | N/A | MSSDQIITEIPKEFVRKWWWEIQNGLPNEKAKVHEDQARLAAKMRQEGSTKMEGLGQMAARINSRLFFRLQGQHGNNVHEWMPEYLKDNPHLCAVGYRPKVNAARHGLTGGWLKNKD |
| Ga0207193_10028813 | F046246 | N/A | MTFSEHAFDACCREAKELGRRLTKTEWLETMQDAYDSYPHQGLIATDGSKPAKGSRIKTVDAAWLEELEQNPAYAGIDIKRELGKAQAWASIRKVGVSQMRFLNWLNKAEASQRPIQYNGAGATSFKAPSAQAASEPAGWREWVRENSTDPSNADKPWSALETVAQKYILSQLK |
| Ga0207193_100288132 | F050991 | N/A | MKKRRDPHQSPTDKFSRLRHAMFSLVGNDNFQDFIEELREMQHSTMIDLCSDVVVQNDRMTLASTGELRAYSQIIGLYDDFVQQQLQQAEADAEERNV |
| Ga0207193_100288136 | F012017 | N/A | MATKRILIGTPLKGEIPKSYFRTSLVLASAEIPNVKLDWILLDGPAVQIARNEIAAYAIENKFDELIFWDKDVLAQRNGVDVTDSALMRLIGHDCDIVTSVYASRSLDTHWHVSSLPGEEPNEQGLQKVERASIGFSKIKVSVFKKIAKDNPDRVAMLIDPNRAPRSIPELFPMELTGRNTPAYRLKEIKNALTECKNDDKLRARIEREFNVRYNEPNAFLSEDYGFCKLARESGYDIWMDSLMVLGHETKVTVPIETPKLMEMLSEPWRKDELAVIKSQLIKQNQAAKEKNNISRN |
| Ga0207193_100288138 | F022191 | N/A | MPKGVKVDGKHGKTTYSPQKLVNSLAVATLEGRGLGLKKHPALANVTNEDKRLLQRIVGITVEEFNQRLIGKLDTLADKIVDRMLDTVDETPLQTLGFNLAVAIDKRQRIAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKASVPTIQSAPIDLADPNDIDAKVVRKTGAVKE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |