| Basic Information | |
|---|---|
| Taxon OID | 3300020048 Open in IMG/M |
| Scaffold ID | Ga0207193_1001854 Open in IMG/M |
| Source Dataset Name | Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Minnesota - Twin Cities |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37545 |
| Total Scaffold Genes | 54 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (75.93%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Manganika, Minnesota, USA | |||||||
| Coordinates | Lat. (o) | 47.489552 | Long. (o) | -92.573009 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014737 | Metagenome / Metatranscriptome | 260 | Y |
| F022651 | Metagenome / Metatranscriptome | 213 | Y |
| F043944 | Metagenome | 155 | Y |
| F054875 | Metagenome | 139 | Y |
| F073561 | Metagenome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207193_100185433 | F073561 | GAG | MFYLCIGNAKMALFSKNVITQVSGFDNPLITGELVYNQRTYWNLQMTSDGVPVNLTGTTIAASIVRRTVSNLIDTRNGLSFDVANYTPPPAAINLTISNIVNANGSFTLVIDDSAWSLITSDPELNIDAVDPACFTGRIKISFPANSPTPAQDNIIFLMFLVRSDGVVVI |
| Ga0207193_100185437 | F014737 | GAG | MTTINAVTGTQINHAEFVKLTVGIAGTVYTFCNAAAPITVGGNTFTNLGALLNVGDVQRDIKATSDDMTIALTGIDSANVALILSSDIKGSLVEVWRGFFDSNNQIITTPTTQFFKRYQGIINSVSITEDFNTEARTRIATCSISCSSMRRILENRLSGVKTNQNNWQFIYAGDTSMNRVSEISNTFFDFGSPPKTQTQASETTVTDNSAGDASP |
| Ga0207193_100185440 | F043944 | N/A | MIFNGHTLDTIQDIDDVTMAHIQTMYADGLVGNYGVLTQIATLTNGVFNYMRPANSPPYKLANVLGSAYDYIYPPLPESSKQAAVNDSLLMFMTQAQGFDKKLFEVKHG |
| Ga0207193_100185441 | F054875 | AGG | MSKFSNAFGDKYQANRKNLLIRSFELGGHTFKVRIPLVAESEAIYKKVSDPDDETIEKIYVQITAPLRQFEATQAENFQFTDNDILVEGRSMREAAKNKSITEARITEFFKLLVPELEGASLDDLTYDDIEQEFPISVQMQIVEKIGEVISPSYREARGN |
| Ga0207193_100185443 | F022651 | GAG | MTTTIKDSNDLLSFLVSQASERKDWFGFAQQRMTAVNLVHQIAQYHADKMTPEEVVNYAIAINHLIFHKIIKAG |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |