| Basic Information | |
|---|---|
| Taxon OID | 3300020048 Open in IMG/M |
| Scaffold ID | Ga0207193_1000044 Open in IMG/M |
| Source Dataset Name | Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Minnesota - Twin Cities |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 179378 |
| Total Scaffold Genes | 281 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (13.52%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Manganika, Minnesota, USA | |||||||
| Coordinates | Lat. (o) | 47.489552 | Long. (o) | -92.573009 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015094 | Metagenome | 257 | Y |
| F018370 | Metagenome / Metatranscriptome | 235 | Y |
| F021773 | Metagenome / Metatranscriptome | 217 | Y |
| F031102 | Metagenome / Metatranscriptome | 183 | Y |
| F095528 | Metagenome / Metatranscriptome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207193_1000044159 | F095528 | N/A | MATKTATKKIAAPKLNIQHSYITLKLPTGNFTTSFGGAKVSGQLVKMKGAFEALDKYVQTAGKTKSFGEAMNDLLNPKLLDKLVPGWDKPVVAEVFAPKDQVSFKDGLFAKKYPGTYEVRQMKGKYTYILLPNKAGNLESIGFASTELTKK |
| Ga0207193_1000044240 | F021773 | N/A | MKWVKNYKLFKESKQDSIYSVKNLVQEICVSMVLINNEFLDNILDRGLKARYSEDSSVFITDLKNLLLAKNRLNLGRFEGNKCIVDDEISKISGLFEATEFSIEKDWDKLSSARTTARNIIDKLLSDEKLSSDRIRMIYWLGPNIDSEHQENIVIELNDGKQYSLFLNKNLATQKTASFNTFADDLIGTDIQKLYNDDYLTHWNKLTQEWVKIIYENANKDIQKHIEKFIDPRRIETMGYFEYFDIRHQDPRYKHLGEFIDVFDKNILKFSDLLNEIWKKKDNCFMDVERVTEEWLETKIVIMNSKILENLLTTSLKTNFSEDIQKTENELKLANGTVKMKLFKTIVEKMGCLERNLYFLGNNGNVFNMVPSREFFRKYYEDLTLKFDYHVNFVVNEEDEENNDFIIKIILELDGEQLIEMFINVKFAGGEMSGKLNAKYKFELADNFNYLISKKQLSEFEPNSDEEDNLED |
| Ga0207193_100004425 | F015094 | N/A | MKLKMFSIRIEEKLIEEYRMFCEENSINISARLRKFMERDMEQWKQRKIAIQRNNNNNNTKPS |
| Ga0207193_100004450 | F018370 | N/A | MKIHILWCTIRPAQFQSAHSEWLKRADNPENIQTYVAVNWKENADELREYLSKNFLITLNTNKIGVCYPSYQLSSNLGVKMGKCEDSDIVVFASDDFMAPQGWDTYLKNKLKGKGDVGLMVRDGYQLPDSSNMLHAAITIPIMTYGCLRKMNGIIYHPAYNHMFSDCELYNNLKELNLLYDDRLNDETIFEHLHYAAGKRNADQADQAYNAKWAEDDLTWQKRKIMPVEKRLEI |
| Ga0207193_100004475 | F031102 | GGA | MREVIKQKYGEAEKGIKGATASKRATKKAEKKDTGKYVTKIVDGVKYMVLK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |