NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193726_1000129

Scaffold Ga0193726_1000129


Overview

Basic Information
Taxon OID3300020021 Open in IMG/M
Scaffold IDGa0193726_1000129 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)106862
Total Scaffold Genes110 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)83 (75.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9871Long. (o)-107.0011Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000664Metagenome / Metatranscriptome950Y
F007270Metagenome / Metatranscriptome354Y
F046441Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0193726_100012941F000664GGAGMADNSMTGTFQLNLPKDLLSEAKRASKHKSEQLRVEGWRNSWLSRISELLVGKD
Ga0193726_100012942F007270GGAGGMRLARPVYEGLPYFYMAIGGLAIFLFYLDPVGLHAVVAFAIGVIAETAALTLLLRRRDFRELSREYTGETIDLPSSLHG
Ga0193726_100012986F046441AGGCGGMTLRAVSRWLSTELISAAMQVSPREREEWAQAMSREVDEIPSDREALRWALGCLQASCHERLKSMRLTNWWPVRWGMALWIALLAVDSLFYAFITLSYKLGLFTEPYPRNFPLLEVTPLWEPMLALVAGVMFLLAIVLILRRSRVALGAVVAPFAIMLLQFAVRLSRPESDILQSLSIAYQQSHFALIWPIAGLAITIVICLALWHDSQKPAPR
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