NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193721_1000633

Scaffold Ga0193721_1000633


Overview

Basic Information
Taxon OID3300020018 Open in IMG/M
Scaffold IDGa0193721_1000633 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9982
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9354Long. (o)-106.9424Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001263Metagenome / Metatranscriptome735Y
F039776Metagenome163N

Sequences

Protein IDFamilyRBSSequence
Ga0193721_100063312F039776N/ARSRDKAAVAGKGHANKLDLKIQRSPRQIILRNGEEIATWEGDPDSRMTLHYPDGGTQDVTIAKGQMHFGPVVRNAKSGSGAESTQPDDEKLAMEAQQAAAVKNYEEALKLYQQAINLKGRFAPFVYHNRGMLYLRRAKASTEPESRIPDLQRAIADFKTSITLGAASDEELNRGLEKVATRANLEEATKLLAQETHP
Ga0193721_10006337F001263AGAAGMKHLIQLLLLGALILLPVKGLQAEPPKDPIYVKTSNGWNAAYAHGNEYAEFRVIGNGAKLQDPYHILLQKGVGMMVSFVDKKELQKNDLLSAHAQWETNYWHQHASRVESNNRADLIGTRKDVKVTEIRVYNDKGAQLSSYLIGLAAKDGVFALSVSSPAKKGVDLLVKELVSSFKLVPRNLDAEETKRLSSEAKAQR
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