NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193739_1000426

Scaffold Ga0193739_1000426


Overview

Basic Information
Taxon OID3300020003 Open in IMG/M
Scaffold IDGa0193739_1000426 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11847
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8827Long. (o)-106.9107Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024928Metagenome204N
F073736Metagenome120Y
F080641Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0193739_10004266F073736GGAGGVPAGDPTPPTPGRDPGGRVAYLPPRAARARKLILRSQLGRGWIMASALFGIVILAAGVLFLARAGRPGPPWVRVARLSALPAGAVTEVLGPAGQVVVVDRRGGELRALLAPGGACPVEAAGDGFARPCAGHRWDATGAPAGDGQQRAPPPLRPVPISFAGGDLYIDPR
Ga0193739_10004267F024928GGAGGMIARVLCATTGSEQAAMKMAALWGEQVGRFERAAPGFQGAVLLREGANLLAVSCWDGQRAAEAALEPLLDRVASSDLDDLLAKPLSCRFRTL
Ga0193739_10004268F080641AGGVTVRALADLGQGARGRIVELRLPPGRRTLPGSPLQPGAVVYVAEATGGRWLHVRIDYREYSIPLGVAEGVLIEVPERPQPPTARDAYAVLVSRLDRRSWRVRVIDRASGVVARSEWFEDELAARRRFQELSGDADALDATAFRARYRLP
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