NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193743_1009576

Scaffold Ga0193743_1009576


Overview

Basic Information
Taxon OID3300019889 Open in IMG/M
Scaffold IDGa0193743_1009576 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5615
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.883Long. (o)-106.9108Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013593Metagenome / Metatranscriptome270Y
F030603Metagenome185Y
F041659Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0193743_10095763F013593AGGGGGMVDINYSLETLTGKHGSLLEVVEAIVSDDRLIVILTDEDVLQRRDAPLKGVFYRLVLPLAPATMNVKGEAFGLIRESLKFTEDVKDLGNLARAIGR
Ga0193743_10095764F041659GGAGGMSSNSGFLDEQGMIDLARKTIEQLKNDGISPTEVKRLENVLREGGVGEALILASLLKTIARELSPEASQRKLLQIHQHLADICQSLVELSRNLFDVDVWQHYRNSGHENFETYCVELLGIPASKIQGLKLLKDQPLPKPKKAGPVELFAWFFNVVEGLAAVRRGHVL
Ga0193743_10095765F030603GGAGMKKDCHCKTINPKPEAIMSLALSRYKFSTPEVRLLLRQVLGHAPSGRTIKRLARFAGHRLKRGRPLTTPKVHKSDLNDLVELTSNGLEVCSGNTLQFFHQIHLQFGLTPQQYLKWAATFVRRGKYMMRRCLLCSEFFASLDSSERHCRECRNDRRRLLNEERRSSFV
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Institute for Fundamental Biomedical Research
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