Scaffold Ga0193751_1000895

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193751_1000895

Scaffold Ga0193751_1000895

Overview

Basic Information
Taxon OID	3300019888 Open in IMG/M
Scaffold ID	Ga0193751_1000895 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	20522
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (82.35%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8924	Long. (^o)	-106.9111	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000867	Metagenome / Metatranscriptome	854	Y
F012893	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193751_100089511	F000867	AGAAG	MRKISIFALSLLTLTLASCSPRDFLTRRLATDLISASAAFQTPQQFTLQTGTVANKDYVSPEYIVLQQRGWITATKAPCSPGLAPPCWDVLLTPSGVETVRALVPAEEADKALLFIPVAKRELLAVTGISKQGNVADVDFLWKWAPVNEVGAALYSSDLHYISTVEFRDYDDGWHIAHSASRYGQSLDDALKNAEPAQ
Ga0193751_10008956	F012893	AGGAGG	MQMAITFLAVVGGMVFSLAVALLAEEFIFGQVFRLFFSQQAVAVKSEQKR

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