| Basic Information | |
|---|---|
| Taxon OID | 3300019887 Open in IMG/M |
| Scaffold ID | Ga0193729_1000003 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 189436 |
| Total Scaffold Genes | 207 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 123 (59.42%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.9225 | Long. (o) | -106.9538 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000280 | Metagenome / Metatranscriptome | 1383 | Y |
| F002111 | Metagenome / Metatranscriptome | 592 | Y |
| F002206 | Metagenome / Metatranscriptome | 584 | Y |
| F003724 | Metagenome / Metatranscriptome | 472 | Y |
| F008327 | Metagenome / Metatranscriptome | 335 | Y |
| F009190 | Metagenome / Metatranscriptome | 322 | Y |
| F050032 | Metagenome / Metatranscriptome | 146 | Y |
| F062284 | Metagenome / Metatranscriptome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193729_1000003162 | F002206 | N/A | MCLAPDGGEGGPSDGATKMRAVTELARSERTSRLLVARLDALASVASQISHVEAERLVELASIATMHAVALETLQAEQAEAIWREAHARHPQLPEVVVDLPERLAA |
| Ga0193729_1000003177 | F009190 | N/A | MPEEKRPDLRPQLRESLAWYEEVLGRIEEGAIVAPGERERLMEEASAVAHLLDLLGSSADDPAN |
| Ga0193729_1000003197 | F062284 | GGCGG | VSLRDRAFHRHAEAVLEHELLRARRQLAELSEERRSAVEEVAADIVAATVDSMLEESRREPALARALDSIYGPEPAWEPRALSWASD |
| Ga0193729_1000003199 | F000280 | AGAAGG | MAQNQDDQTRPARPLFGYRDVGESVRHGRNAMTRAWIVLAILIVVYLAWTLTVYFVEPGL |
| Ga0193729_1000003200 | F002111 | AGAAG | MAEISVLPFVSYSSMTETIIPGAQWPAVYSSLQALKGHVQEYPGCQSFDVFVRAEGDGDVLVHCYTTWDTPGQLEVFLERGYTVERLLADVGSELSASRSLVMEKVF |
| Ga0193729_1000003201 | F008327 | AGGAGG | MSMPTGDTPEKVQQFYLYLNGHQETTRPVESWHVDWLSVAWLWGFVFALLAVLFLWVRQYRTTRQRSGIYPVDSFGGWTTEGAGPATGFFLLFTVLIVGFAVALIVGHLVWGQKF |
| Ga0193729_100000322 | F050032 | GAGG | MAAEQRLGDGFRKLDDLVLQLKGLVLVRGLREQCGADEGELLMYGAEIDRVRGQLATFARNGT |
| Ga0193729_100000327 | F003724 | AGGAGG | MKEAAVLMSFLRHDPVGQRFGVGALVLAWFALAWTSLAAALAVPLLLVVSELVRRRREDHMPIVDDLDDLY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |