NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193741_1001722

Scaffold Ga0193741_1001722


Overview

Basic Information
Taxon OID3300019884 Open in IMG/M
Scaffold IDGa0193741_1001722 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6345
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8826Long. (o)-106.9101Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002896Metagenome / Metatranscriptome522N
F007651Metagenome / Metatranscriptome347N
F016471Metagenome / Metatranscriptome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0193741_10017225F007651AGGAGMLRMHSNSMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSDSFRNMHDNSVQYYKQKANEELDKMEKNIQSGNKLGAINEKLLADTYLSFATTI
Ga0193741_10017227F016471N/AMTKADKFNAVKDATVAIGLANKDTKEVISSFGTGFFIGGEYIVSSAHIFSQCIKYNAQYKDKNRSMEGMYSAFNITTKGDQLELNTYHIIKAIRLPPVKEVTGFTGSVDLDIGIGKLDRHSDNFLHIKESAQLKLYDEIVICGYPSGRISLVWKNIVGSV
Ga0193741_10017229F002896GAGMDKMNEDTILHFYRILENSLLESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGEISPVEASKYLVSRKHDECQVSYDHNNVEYILWMMTLMFMSWSVTNLKRKTQNGHCQNIDHPHGYTNPRLCKEGTIFHQELYNECVKTFKDLLIYSDAQNP
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Institute for Fundamental Biomedical Research
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