NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193723_1000584

Scaffold Ga0193723_1000584


Overview

Basic Information
Taxon OID3300019879 Open in IMG/M
Scaffold IDGa0193723_1000584 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14331
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.987Long. (o)-107.0038Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057971Metagenome / Metatranscriptome135Y
F088470Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0193723_10005843F088470GGAGGMKRIMMVLALAAFAAAPAAAQWLGMPVWNSPKGGTGVTINGDLGMPNANGGKGTAFGFRGSLGLANLQLTAGLSNWKPDGAAESFTSVGGNAAFRIIGGSLLPIALNLQVGAATTGAANAFPSQTRLTAGGGVAVSVPTPGISIEPYLSLTNRWYKFSGVSGTSSNFGWTLGANANFGMLGFHVAYDSESIGGGSAGIIGIGAHIALKAPIGM
Ga0193723_10005845F057971GGAGGMRKVLSSIALVAVLVSVPALASAQRRAATMSGAKHEFGVDVGVGYVKPSGVSGGIVIGTPIDVRVGLMSTGKMMWEPRFTLGFSSVGGSSTYDFEPGVNVLFANTPGGHRRGMYFTGGAGLLLADNGATNGTAFSLNAGVGWRKPYGSGAWRYELGFKWQSESTDLGLPSTITIGARIGLSLWH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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