NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193720_1018246

Scaffold Ga0193720_1018246


Overview

Basic Information
Taxon OID3300019868 Open in IMG/M
Scaffold IDGa0193720_1018246 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)991
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9354Long. (o)-106.9424Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001079Metagenome / Metatranscriptome785Y
F001935Metagenome / Metatranscriptome615Y
F007262Metagenome / Metatranscriptome354Y

Sequences

Protein IDFamilyRBSSequence
Ga0193720_10182461F007262N/ALYPVDSFGGYTTELAGPATLFFLLFTVGLTAWAVVLVVGHLVWGQKF
Ga0193720_10182462F001079AGAAGMAVELTPAAPSALPYVSWSSWGMAVIPAADWPLVFGSMQALKGHVQEYPGCQKLEAFVEAEGADYRVHCYTTWDTPEQLEVFLERGYTFERMLADVGLQAEPPRMMEKIF
Ga0193720_10182464F001935AGGCGGLYLKHVSSLQFLTYISFFAVVMAALFKFVPGRSPPVREMPYPDDELHAHDPKTAKYFLAGGFFLVLGSLHMALKNLPWLAEYLARTGYAGHLVRDLSNTHVMIVGGGTL
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