NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182031_1445377

Scaffold Ga0182031_1445377


Overview

Basic Information
Taxon OID3300019787 Open in IMG/M
Scaffold IDGa0182031_1445377 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4789
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055869Metagenome / Metatranscriptome138Y
F077619Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0182031_14453777F077619GGAGMPDLGNSRRKLKIAIGAMLAADIVAVAVLFSPLVGSADSRRTQILELKAELTKKPTRWRR
Ga0182031_14453778F055869GGAMPPNLHVVLAAPELNEQNQMQLELRVEGETRAAAVELVHHMEGSKHFQSAQLVQEMGTEKGTAVIASIISIYVRMRPRGAEK

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