NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1041135

Scaffold Ga0181359_1041135


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1041135 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1790
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008552Metagenome331Y
F013087Metagenome274Y
F033803Metagenome176N
F084238Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10411352F013087N/AMEPTVWIYFSKTGTGYELKGSDIISGFDAFIHSDGTYMVEYAFSDMKNSMHFFIYEWDNTQKKRRTIFEGYQRENILVNFAKNVDICHLVRQAIYKEYLMDNEELELEKNANS
Ga0181359_10411353F008552N/AMSVMIISFEASASEDTTLFGYFSMEYDPEFFSDIRENLTDIPKNKPLAFKLDTDNVKLLQGAFHTIRRIICVPDVEQQKFTYVFKRNFQAGTAKKFKYAKLHIDKDYFYFTGHHENLDGTKPVEFQSLNFDARFIDTIQNQYIKHQENMVN
Ga0181359_10411354F033803N/AMTINLRKNIARFIYIIDQTTNVDSRANILKELDLTENEFQELVSNLLQFSNSDNREFYCCNPEYHGFIETFKIISEKTETEFLI
Ga0181359_10411355F084238N/ASETVKQMADDLEATEWRDSYIQNYDIEEQEFKDLVRMFRLHADAGHYLLAWY
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Institute for Fundamental Biomedical Research
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