NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1036869

Scaffold Ga0181359_1036869


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1036869 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1895
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F002245Metagenome / Metatranscriptome578Y
F004840Metagenome / Metatranscriptome421Y
F006744Metagenome / Metatranscriptome365Y
F011299Metagenome / Metatranscriptome292Y
F017995Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10368692F000447AGGMGYIEIFRMDNEGAGWVDLSEATPDELFNIELGLLEEGAFE
Ga0181359_10368693F006744AGGMNLDEFKKHVTAQREVSKAEALSVLSATITTQSNERENLNG
Ga0181359_10368694F017995N/AMKELIEIISANCDECGGAGFLFFGNENNYDIEPCSCIADLSDELNVDWVNN
Ga0181359_10368695F004840N/AMYKITCAYDSEPIHYIREYENEFGAWENFFLFTDWGFADEYSTVNLYTPTGKCHTKVFYREGRRVVVK
Ga0181359_10368696F011299AGAAGGMTRKDYVAVAEILNFASDKTHPAIFSKMVNDFAVMFAKDNDRFDVNRFHEASGYNVPNFNSR
Ga0181359_10368698F002245N/AMKVPHTVVFEAIIDLDKIPANLLPALIALSETDVLRMCKEATLHALAESKVLQIANENNTWAEVIIKEGE
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