NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1023929

Scaffold Ga0181359_1023929


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1023929 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2328
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005727Metagenome / Metatranscriptome392Y
F027748Metagenome / Metatranscriptome193Y
F029368Metagenome / Metatranscriptome188Y
F085368Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10239292F005727N/AMRSLTRSRSPEFHRATMLKVAAIAVLLCLLWEPIRPIRNVTAQALYTAGDMIAR
Ga0181359_10239296F027748N/AMTYAQITASELSASEARVAIFDLADDFSWETVAREMISRMSGDEAREFVDDFQRLYAD
Ga0181359_10239297F029368N/AMRYNPATDRALSIDEIAAQCRAAIMKADERRYVEQVADRIYDEILSAARWEDDVLIAA
Ga0181359_10239299F085368N/AMRFPLCMCSDLETRQIKWISRADQLKNGGRPAAYIHWGVPATAIAAQYAEAHRNDVRQAQWG
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