| Basic Information | |
|---|---|
| Taxon OID | 3300019784 Open in IMG/M |
| Scaffold ID | Ga0181359_1021806 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2431 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F000980 | Metagenome / Metatranscriptome | 814 | Y |
| F001043 | Metagenome / Metatranscriptome | 794 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F002207 | Metagenome / Metatranscriptome | 583 | Y |
| F047650 | Metagenome / Metatranscriptome | 149 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181359_10218061 | F002207 | AGGA | MPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQENHGMGDINANGFPTKIKLVEYNNPVFSFYNIHSYRDEGITDEEYACQPDRSGLDMNDPDWFPKSVAFAKTQKDWYSWNNSNWGTKWDVAVSDDEKYPETELLEYKSEGDDNWVIYKYETAWSPAVTIL |
| Ga0181359_10218062 | F001125 | AGGCGG | MGDRANFGFRDSKENIIFLYGHWAGHRMLENLANAVEQARPRWTDESYATRICVSQLINEEWASETGWGLNVNEIGDNEHKVPVIDWKNKTFTLYEHDLHSPVFSLALDAFVTKYSSQPSMV |
| Ga0181359_10218063 | F047650 | AGAAGG | MIMEDLQVVYYCDSCNVARASYLVKLMDGELAFCGHHYFKNKGPLDEKSYEVIELNKVEEDAAVPQLTKAE |
| Ga0181359_10218064 | F001043 | AGG | MSDYKDGFDDGYKFAREELMEKLSEIDINDIDSWILDRLCEMIEGGKL |
| Ga0181359_10218065 | F000311 | GGAG | MYFELTAPDRLSLEMAYWDAQITGLDPEFMPPLTFNVGTGSIEKVSRIRDKYNLSESYWSDREATGYKGK |
| Ga0181359_10218066 | F000980 | N/A | NTRMTKYQKYTWVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGTACTLLSVEDATIPYTDSPLPTKEEPMETETPAVTVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQANLYVSQIDAAKEIICEAYADSQDQDTLREIAEALGIELIKEVEWSASIEVSGTYSFNILENDYDMDLESEITDAIFADSHHGNIEINDQEVCNVREN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |