NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1015274

Scaffold Ga0181359_1015274


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1015274 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2836
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002092Metagenome / Metatranscriptome594Y
F015599Metagenome / Metatranscriptome253Y
F018537Metagenome234Y
F018924Metagenome232N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10152744F015599GGTGGMKLTIKNYEKLFRKQWDDKNYIEEIDETRNEYKINVWREYTRHFIILNRRPVDTGYYTIGKWSNEAFCVRYPYWIKHEDIVNINSLMDKLKLLTDDWTPKLL
Ga0181359_10152746F018924N/AMTNSEKAIAQLFGVLCSIIKSEQTPQMTKQATINTFQHLIGEDGSPFLDDELIKLSTAMDMEMQSIVRQLNGDRVLNEVLTNNINLN
Ga0181359_10152747F018537N/AMAANRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKSWSKSRQNDVPWRVAQYIDIYLHSANPNRIRIWKKQGMERKNLQLNDTNVMIARTLGSMGYSLADGVKHVEKSHYSSPLDAIRHLQHQTQMQDPKFQRKEMKRKYMNKSYKLQKGDWGYITQELLDYTYLCQFATFTQLKKHYDIAIRGNSSSQNGGSFIHHLQSLVSPTNALGRRCKRYLHKDIITGKYRIATM
Ga0181359_10152749F002092N/AWRTTNQKAIDYLNGNPIVANFINKLNIQRKDHYVKADMVSQWKELIVEVGQKYIRLWVGTSCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYSTYGPEYL
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