NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1011926

Scaffold Ga0181359_1011926


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1011926 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3132
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002997Metagenome / Metatranscriptome514Y
F022651Metagenome / Metatranscriptome213Y
F038203Metagenome / Metatranscriptome166Y
F054875Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10119262F054875AGGMTKFSSAFGDKYQANKKNLLTRSFELGGHTFKVRIPLVAESEAIYKKVSEPNDDLIEQTYIEITKPLRQFETNQTEEFKFTDDDILIEGRSMREAAKNKAITEARITEFFKLLVPELEGASLEDLTYTDIQDEFPVSIQMMIVEKIGEVISPTYREARGN
Ga0181359_10119264F022651AGAAGMTVTIKDTNDMLNFLVAQSDSRKDWFGFTQQRITAITLAHEIAARHADKFTPDQIVDYVYSLNNALYQKIIKPLG
Ga0181359_10119268F002997N/AMAIARFENITVNSLVFAKSSFGEQTTATALWFATRARVSSVTNNVKISEKYRVYQDVVNFTLNYTPNTRTIVNNQNSYSINYRSFDWRIESVRETDDRMNVILTCVRNDPVAAV
Ga0181359_10119269F038203N/AAANPLQTYPVIKQAGLLLLTHLYNNRSNTTEVQLKDIPFGVSTLLRSYKPLVM
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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