Scaffold Ga0181359_1011563

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181359_1011563

Scaffold Ga0181359_1011563

Overview

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1011563 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	3174
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018714	Metagenome	233	Y
F051884	Metagenome	143	N
F093284	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10115631	F018714	AGGA	MTDIEYYKTLVVGVIIGASITILAFYMLKPSSQNHTVTPKTNFAVVDTYKGCDIVQWTD
Ga0181359_10115634	F051884	N/A	MTEHNLPVPDDAPWLDTKYDGFDEEQIKKVLKAQRQAQKLLDAAHRVADGEVPLGKLIRLGHKDPMSVRVRYEYGAILLALVEECAYMKDGLTLVNVRDILDIIEVLNNGC
Ga0181359_10115636	F093284	N/A	MSERSEILMKQVWDVNASTEEELVSSVLQLAVEHIQSYNAQNDMIVLDKNDLLQLAEELK

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