NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1007661

Scaffold Ga0181359_1007661


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1007661 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3690
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016774Metagenome / Metatranscriptome244Y
F048101Metagenome / Metatranscriptome148N
F048121Metagenome / Metatranscriptome148N
F062446Metagenome / Metatranscriptome130Y
F066486Metagenome / Metatranscriptome126Y
F082109Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100766110F048121N/AMNTTQTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGSVVSVSAK
Ga0181359_100766114F016774N/AMPPKKNKIIITQDHLDSLNHWRNEALKLEKSYYSKDSEKERTCRNMINKYLDDVLDYNKNIKEKPKNKV
Ga0181359_10076613F066486N/AMKNKTISKNDPYHLKVGKFKKKNVFDTQVDMGDRMRDFFLGLGRRVITEDEFINIGFNYALIKGLGEAKKTKSKRK
Ga0181359_10076615F048101N/AMKMKKFKNIKEFLKTCSHDEQEYIYDLYNNASVADLIDLLFEHLPADDTIQEIQEYREEMEWDNNEAKKSNKPKRKCDCDFVGCQGC
Ga0181359_10076618F062446N/AMTSKTIRVIGFILYCLFWMAMAYLFVGCANVSYKTIPDGMSEDAQDYPTKYNMMDSPDGRRNPNAQVNIFGATY
Ga0181359_10076619F082109N/AMWTPIEIFLLTFLLNYSPMKSERLSVKEVIQNREAQLLIESVSLRNDI
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