NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1006354

Scaffold Ga0181359_1006354


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1006354 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3937
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006891Metagenome362Y
F009066Metagenome323Y
F031026Metagenome183N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10063545F006891N/AMSTDQVAELSERLSEVRISVARIETRQSVILDILERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVFSTIWELIKRRLSF
Ga0181359_10063547F031026GAGMRGGLNALLLISALALCSCATTQTQDGPPPSPDSISYFIYAWDKAERTNAPCPQAYRDLFAESLKALSDSLAETERERARQ
Ga0181359_10063549F009066GGAGVSPEHEKHLASILSDLVKDVDAKYRKGQDQHGGALWRRPVWKDAWEECLDLCTYLHTLRMQLSVIADLALLGASDESVAASSSRESCRQILAVLEGLPSAVDKK
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