NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1004750

Scaffold Ga0181359_1004750


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1004750 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4342
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031407Metagenome / Metatranscriptome182N
F034112Metagenome / Metatranscriptome175N
F064518Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10047505F031407N/AMTDKEKALIIIDLIEKITQEIIDKPMQRKRLLQMRGHLEKAVKLTGNGIKREWSRPPSLPIVSHAKAEPIPFIPTTTETNGDLLADNIPVVTKKARKR
Ga0181359_10047506F034112N/AMVIFNIGNKQIKYNYPETAEDITLEQYIYFAKFLLPEHPKTELEAIQYMNDRDALYKKILPYAKKLKVKVTGFEQLYVILKLEYTLEQEEVKDNVRRFLPPLISQWRSNDEQLTQRLEIMDEVWEAKERYPYMAKVVNYFTGIPLDACFGKVADSLELKYLVYIYGKIMNAINTPAETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGDPEGLLNIMAVLLKPLGEEYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSEKYTLDLQTSMLERAMENLN
Ga0181359_10047507F064518N/ALTIKKVAESGLFNLTGFTPMESAEKAKLYQVFQYLASKAAEEKVIEDLSKQKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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