NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1003000

Scaffold Ga0181359_1003000


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1003000 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5065
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003962Metagenome / Metatranscriptome459Y
F011208Metagenome293N
F019450Metagenome / Metatranscriptome229Y
F024501Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100300012F019450AGGAGGMANIKHSYAVYNSVGQFFARFTSYARALRWAVRNGMEWSAIIRKERETQTK
Ga0181359_10030002F003962AGAAGGLNQDREQLKVAHKFIALLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEVQWNSLTEQVKRLSGFFESHQKALQSLHDACPSVWDTDEVDE
Ga0181359_10030004F011208AGGAGMTEEEIIKAYLSRLGKKGGSVKGSCKARKLSREHYAKVSKAQRERWDKFRLGRQTEAQASKR
Ga0181359_10030006F024501GAGGMTHPKQLDEVGITESYLRKMAKKEGVTYKKAVQIAMEQWGEYSLKLINKLVAEDIKERKRNR
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