NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1002404

Scaffold Ga0181359_1002404


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1002404 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5422
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F008808Metagenome327Y
F010680Metagenome / Metatranscriptome300Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10024043F001531AGGAMDWSRIEKWDYVATAVASEYRRKFDMVEYDDIKQSLYEWFTQHPNKLDEWEKIGEKDAKNLIYRSLRNQALDYCQRWKAKSTGYDVSDLYYYEADIVEALLPPVLRNEWGVSHKLNLGIPGRPSAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKEIANFLSLGSDDTARMRGNRAVKRLVVKLGGYRPYNDIDFTPSTETEESQDSQETE
Ga0181359_10024044F010680N/AMIVTLTKDEVRVCANLAVERWLAKMGSVDRPNYAAGKRLGKLEPEINANIRANVAEWAVARTYNMQWSVPWYPNELHRQRKDIPDVGDVEVRTVRTRDSIPFWKKDAGRTIFGVKVTDEEYYSTVEIYGSFKADDYMTDEYYQADIDGWRVPLSQIQEVIVA
Ga0181359_10024046F008808GGAMTQYDSKCPECGEEFDNVFEATDHLLEEDEEFDPALILPNGYRLMVGSLLRCLYGHANNPALIKDVVQSTYATLFAAETKPDVLGSVIEDIIVGSSMNGLDDELKKLLEDGK
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