| Basic Information | |
|---|---|
| Taxon OID | 3300019784 Open in IMG/M |
| Scaffold ID | Ga0181359_1000014 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 38494 |
| Total Scaffold Genes | 56 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 46 (82.14%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001094 | Metagenome / Metatranscriptome | 780 | Y |
| F001515 | Metagenome / Metatranscriptome | 679 | Y |
| F001531 | Metagenome / Metatranscriptome | 676 | Y |
| F008808 | Metagenome | 327 | Y |
| F026858 | Metagenome / Metatranscriptome | 196 | Y |
| F041080 | Metagenome / Metatranscriptome | 160 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181359_100001426 | F001094 | AGGAG | MNKKLEAILATYLRAAVASVLALYLSGVTDPKSLLMAGIAAVAGPVLKALDPKETAFGRGSGKAMQVK |
| Ga0181359_100001436 | F008808 | N/A | MKNDMKKCPQCGELFENVFEAIDHLLEEDEDFDPALILPNGYRLMIGSLLKCLYKYSNEPEKIEEITESTYLTLFTAETNPLQIMNVVEDMIVDSSMIGIDDELRHLLGNGE |
| Ga0181359_100001438 | F001515 | N/A | MTNKSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECYFKKIEAWAPSGLMVTEAAYWAFVLEESTLIVPIDALKYAVKEFGREIECNIPPNLSKGKLITVDDLMSATRLYKKAKADELATH |
| Ga0181359_100001439 | F001531 | AGG | MNWQRIEPWDYVVVAVASEYHRKYAMVELEDIKQSLYEWFIEHPNKLDEWEAIGKRDAKNLIYRSLRNQALDYCQKWKAKSVGYEVSDLFYYAPEVVEAMLPAVLRHDLTITPQLNLGGSSTPTAPSEGGNLMAMMIEIDWGYWKLSKDDRRIIFLRHAESMDYKEISNTLSLGSEDAARMRTKRALNRLISKIGGHKPYRDEDSTPAGKEVEPAEAESLEEGDEHNNTDE |
| Ga0181359_100001449 | F041080 | GAGG | MSTTQTILGLADELRIIADEISYNAFDSSSDFPKRGTIVKATASQTRFKPKSMWVSLGNGTYKHLTGSKGLVTTHERLDGYTEVVFEA |
| Ga0181359_100001452 | F026858 | GAGG | MTHDNLLLNLTQREVEVIRMALRVQEDTHKRNDFPSLVLEVQDLRSKIADMIIDNARELTKA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |