NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000008

Scaffold Ga0181359_1000008


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000008 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)42365
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (82.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001061Metagenome / Metatranscriptome789Y
F004759Metagenome / Metatranscriptome424Y
F005233Metagenome407Y
F091622Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100000822F004759AGGAGMKDMTQDKKMVKSAIGKHEKNMHPGKAPTKLAKGGKTNEMMMQYGRGMAKVKNQGK
Ga0181359_100000845F005233N/AMLEHLINGEFHPEVVDATAEVLSFEKADPTTTIDAKVKTAQWLKDLELEDEEIESKAEHESARKSFASLVSGQPVGNTQQALANLKTPAAVQHLVGMLTAYDWAFVEQAKELRGYAVAQILKEVKHPDARIRLKALDMLGKVTEVALFTERIEVKKTQMSDVELETRIKEKLNRFMGVIDVVDVAEDKDEA
Ga0181359_100000850F091622GAGGMHKAYIKLKPNDLHQRLLKERIHPAEMQRIKDEVAETKEAQRVDKITRTQRKAEWDKVLKPLRYELNNAKVGRAYDLDDEARVEAFDAYILVLETLLSRFAQPLASLDATPIQIAIEKQLPNNGEHWTDWVPDKIKTRIALAFEAIPHKTRAKRKVPFQRLTTPEQNAKARDKLLARTRKEIETLERKQEMNSTEVGQATLERMREALKIIARLTDTEHIPATWSGVL
Ga0181359_10000086F001061AGGMAELNAIPPSLPLAPKEYDSRYFSQLSNVLRLYFNQLNNPGDMGGTTLNLNLATLPTEADFASLRLGDVYRDTQDGVQDGSQMLRIKTST
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