NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181361_102011

Scaffold Ga0181361_102011


Overview

Basic Information
Taxon OID3300019783 Open in IMG/M
Scaffold IDGa0181361_102011 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1480
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008615Metagenome / Metatranscriptome330N
F016114Metagenome / Metatranscriptome249Y
F026828Metagenome196Y
F036110Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0181361_1020112F016114N/AMNKYWAAAFFDSRDVETINDMAAMARRQLICVRELQRDELLRLKMKYPHLTTRD
Ga0181361_1020114F008615N/AMNTPNTFGAKMFTRFMRKGWHISFTDSYQDRVCVIPPDRLNAQHVFGIYIPVMRHTWQPDLKREWWAALQSKNTMLGPTFEASAHPDDVERFAAFATWIGDLLRNPEKFT
Ga0181361_1020115F036110N/AMEILVFAATVAVSAFGFLISREMNRTSEELKLLRQDVFRLSVDLAKLQTRLDDLI
Ga0181361_1020116F026828N/AMITEELITSAIAFLAGWVLKRPDFVQKIISKLFTKKDK
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