NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194024_1037162

Scaffold Ga0194024_1037162


Overview

Basic Information
Taxon OID3300019765 Open in IMG/M
Scaffold IDGa0194024_1037162 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1064
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022881Metagenome / Metatranscriptome212N
F063659Metagenome / Metatranscriptome129N
F077038Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0194024_10371621F077038N/AMVRLPDVTSTKVIVPTVLFAFLSPAVTGMGGLVDRLGMTSVFGILYIIILRGAMKYVVRPSEVYLASGMYFLLSGMTTDQTLIVRNTFLYW
Ga0194024_10371622F063659N/AMVGSNLLDYTPIASEPQVIEDYDNDEDEGLIDPNEYEYEDWIAYYSDELWNNWELYRQHCYDNMVPETLTFSEFCKNEYYC
Ga0194024_10371623F022881N/AMPISDQFKEAIAEIEGIKTQLTEAQKAIKVLKDRESSLKTFIGGYMKAQKIDDVQTRGGTKVTQKTSVKKPAITKKILMDELPNYIEGGQERLNQIIKEIEDKLEPKETSSLQLKLKKKSEE
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