NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194024_1000048

Scaffold Ga0194024_1000048


Overview

Basic Information
Taxon OID3300019765 Open in IMG/M
Scaffold IDGa0194024_1000048 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23669
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (19.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065692Metagenome127N
F084100Metagenome112Y
F084717Metagenome / Metatranscriptome112N
F101206Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0194024_100004810F084717N/AVNDLVTIYDLFKTFGDGHSMVNEFKLLNSLDDLQDIEINHRGLYIALEDANISRDEGSPVYDVMFNVIIVDKVPLDDSIALMNSNQENLFVMGQLQDYFQKNLDGEQSFQEVNMRGFSADDYNITSAISGATFIVGRNPYIRDIDI
Ga0194024_100004828F084100N/AMKEIYKNWEIRKSDYAVGYYEATNLNDCDACMIHAKSVEEIKTEIDEILLDN
Ga0194024_10000483F101206N/AMANSINTTPNLANTESLWGDRSRDLFIDAMVKSAAVLNRFTLIDGVKAKVNVPIFEVGAQTFTAGDDCAFTDTTPTTITEKEMSVQTFSWGFKNCKAVLEKSYRGVALKKGQHNPETMDVEFRNWVFDYFAKLAAQKALTYAGSELLGEMQVDADVIMDDRWDSSGSGAPGLVIASSNILDAMQDAYEDMSDVMLSAVYGDADREFRPAYFLGTKAYQAFQIAMAEDFAQSMTLSSSEGIAKGAIPTYYGMEVIHLASLADNNIIVCSPSNLVMLTDDYNDVNAIDSEYEAKENSEYLWGRFKLGFSYLKGDEIVLITNIDPS
Ga0194024_100004838F065692N/AMIYKVIRSKAIQYIFDTIEDARECRERLMDMGYNNISIVVEQEDVP
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Institute for Fundamental Biomedical Research
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