NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194023_1041575

Scaffold Ga0194023_1041575


Overview

Basic Information
Taxon OID3300019756 Open in IMG/M
Scaffold IDGa0194023_1041575 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)927
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043965Metagenome / Metatranscriptome155Y
F090413Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0194023_10415751F043965AGGAGMAISSKVYGKSQYSIGIKQKAVTAFEDGAATDTAYQLLPVINVSAPVLNLVESGEIRSNNAGMIETDFDQFRTRKGGFVTLDFEVPAERAGLSRLLANVLQDHVESGSYIHTIESSSSNPLARPDLSSSASAVGDGIPSIFDIALYGPATGEDKLISSAVLQSLTMNFDMTDGRLLLNGTFYSGFASSDGFKVGQTLTANSGEPTLMSA
Ga0194023_10415752F090413AGGMKYKHIKGLQLQKPSYLDTPNQKIRELLEGKEVELSEENVAEFESLGVQVKPVENKPKKKKVKKEE
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