NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194023_1025557

Scaffold Ga0194023_1025557


Overview

Basic Information
Taxon OID3300019756 Open in IMG/M
Scaffold IDGa0194023_1025557 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1196
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002586Metagenome546N
F003365Metagenome / Metatranscriptome491Y
F029238Metagenome / Metatranscriptome189N

Sequences

Protein IDFamilyRBSSequence
Ga0194023_10255571F002586N/AKPIDVELALDTANKRFIGNLKMNKGFSYGYNKGLKGQLTDGFLGALGEVAYAKAMNNFYNGSYTDNLERYNDSDFQNNIEIRTQEKRNYNFLLIRPGEKKGKYILIIKDNDKDFNFSIMGWFPFVDDMPERLTNFGHYDRPAAYKIDIKELYNMNDL
Ga0194023_10255572F003365N/AMKTIGKEWTKKEEGGMFTADHLSPSQLNKNVDQWFNDYCVLTAEQRKKISPNPKMIFGGFVGQALQDIIVYNLTIDEVMEGKK
Ga0194023_10255574F029238N/AMKLKPQAEEKNNSAGGFKERRKKCLDALINIPTVNIKGKKYSTVNERHKHLL
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